compute_nodes.py

class openaerostruct.structures.compute_nodes.ComputeNodes(**kwargs)

Bases: ExplicitComponent

Compute FEM nodes based on aerodynamic mesh.

The FEM nodes are placed at fem_origin * chord, with the default fem_origin = 0.35.

Parameters:

mesh[nx, ny, 3]numpy array

Array defining the nodal points of the lifting surface.

Returns:

nodes[ny, 3]numpy array

Flattened array with coordinates for each FEM node.

Store some bound methods so we can detect runtime overrides.

abs_meta_iter(iotype, local=True, cont=True, discrete=False)

Iterate over absolute variable names and their metadata for this System.

By setting appropriate values for ‘cont’ and ‘discrete’, yielded variable names can be continuous only, discrete only, or both.

Parameters:

iotypestr

Either ‘input’ or ‘output’.

localbool

If True, include only names of local variables. Default is True.

contbool

If True, include names of continuous variables. Default is True.

discretebool

If True, include names of discrete variables. Default is False.

Yields:

str, dict

abs_name_iter(iotype, local=True, cont=True, discrete=False)

Iterate over absolute variable names for this System.

By setting appropriate values for ‘cont’ and ‘discrete’, yielded variable names can be continuous only, discrete only, or both.

Parameters:

iotypestr

Either ‘input’ or ‘output’.

localbool

If True, include only names of local variables. Default is True.

contbool

If True, include names of continuous variables. Default is True.

discretebool

If True, include names of discrete variables. Default is False.

Yields:

str

add_discrete_input(name, val, desc='', tags=None)

Add a discrete input variable to the component.

Parameters:

namestr

Name of the variable in this component’s namespace.

vala picklable object

The initial value of the variable being added.

descstr

Description of the variable.

tagsstr or list of strs

User defined tags that can be used to filter what gets listed when calling list_inputs and list_outputs.

Returns:

dict

Metadata for added variable.

add_discrete_output(name, val, desc='', tags=None)

Add an output variable to the component.

Parameters:

namestr

Name of the variable in this component’s namespace.

vala picklable object

The initial value of the variable being added.

descstr

Description of the variable.

tagsstr or list of strs or set of strs

User defined tags that can be used to filter what gets listed when calling list_inputs and list_outputs.

Returns:

dict

Metadata for added variable.

best_partial_deriv_direction()

Return the best direction for partial deriv calculations based on input and output sizes.

Returns:

str

The best direction for derivative calculations, ‘fwd’ or ‘rev’.

check_subjac_sparsity()

Check the declared sparsity of the sub-jacobians vs. the computed sparsity.

property checking

Return True if check_partials or check_totals is executing.

Returns:

bool

True if we’re running within check_partials or check_totals.

property comm

Return the MPI communicator object for the system.

Returns:

MPI.Comm

MPI communicator object.

comm_info_iter()

Yield comm size for this system and all subsystems.

Yields:

tuple

A tuple of the form (abs_name, comm_size).

compute_sparsity()

Compute the sparsity of the partial jacobian.

Returns:

coo_matrix

The sparsity matrix.

dict

Metadata about the sparsity computation.

convert2units(name, val, units)

Convert the given value to the specified units.

Parameters:

namestr

Name of the variable.

valfloat or ndarray of float

The value of the variable.

unitsstr

The units to convert to.

Returns:

float or ndarray of float

The value converted to the specified units.

convert_from_units(name, val, units)

Convert the given value from the specified units to those of the named variable.

Parameters:

namestr

Name of the variable.

valfloat or ndarray of float

The value of the variable.

unitsstr

The units to convert to.

Returns:

float or ndarray of float

The value converted to the specified units.

convert_units(name, val, units_from, units_to)

Wrap the utility convert_units and give a good error message.

Parameters:

namestr

Name of the variable.

valfloat or ndarray of float

The value of the variable.

units_fromstr

The units to convert from.

units_tostr

The units to convert to.

Returns:

float or ndarray of float

The value converted to the specified units.

declare_coloring(wrt=('*',), method='fd', form=None, step=None, per_instance=True, num_full_jacs=3, tol=1e-25, orders=None, perturb_size=1e-09, min_improve_pct=5.0, show_summary=True, show_sparsity=False)

Set options for deriv coloring of a set of wrt vars matching the given pattern(s).

Parameters:

wrtstr or list of str

The name or names of the variables that derivatives are taken with respect to. This can contain input names, output names, or glob patterns.

methodstr

Method used to compute derivative: “fd” for finite difference, “cs” for complex step.

formstr

Finite difference form, can be “forward”, “central”, or “backward”. Leave undeclared to keep unchanged from previous or default value.

stepfloat

Step size for finite difference. Leave undeclared to keep unchanged from previous or default value.

per_instancebool

If True, a separate coloring will be generated for each instance of a given class. Otherwise, only one coloring for a given class will be generated and all instances of that class will use it.

num_full_jacsint

Number of times to repeat partial jacobian computation when computing sparsity.

tolfloat

Tolerance used to determine if an array entry is nonzero during sparsity determination.

ordersint

Number of orders above and below the tolerance to check during the tolerance sweep.

perturb_sizefloat

Size of input/output perturbation during generation of sparsity.

min_improve_pctfloat

If coloring does not improve (decrease) the number of solves more than the given percentage, coloring will not be used.

show_summarybool

If True, display summary information after generating coloring.

show_sparsitybool

If True, display sparsity with coloring info after generating coloring.

dist_size_iter(io, top_comm)

Yield names and distributed ranges of all local and remote variables in this system.

Parameters:

iostr

Either ‘input’ or ‘output’.

top_commMPI.Comm or None

The top-level MPI communicator.

Yields:

tuple

A tuple of the form ((abs_name, rank), start, end).

get_coloring_fname(mode)

Return the full pathname to a coloring file.

Parameters:

modestr

The type of coloring file desired. Must be either ‘input’ or ‘output’.

Returns:

pathlib.Path

Full pathname of the coloring file.

get_io_metadata(iotypes=('input', 'output'), metadata_keys=None, includes=None, excludes=None, is_indep_var=None, is_design_var=None, tags=None, get_remote=False, rank=None, return_rel_names=True)

Retrieve metadata for a filtered list of variables.

Parameters:

iotypesstr or iter of str

Will contain either ‘input’, ‘output’, or both. Defaults to both.

metadata_keysiter of str or None

Names of metadata entries to be retrieved or None, meaning retrieve all available ‘allprocs’ metadata. If ‘val’ or ‘src_indices’ are required, their keys must be provided explicitly since they are not found in the ‘allprocs’ metadata and must be retrieved from local metadata located in each process.

includesstr, iter of str or None

Collection of glob patterns for pathnames of variables to include. Default is None, which includes all variables.

excludesstr, iter of str or None

Collection of glob patterns for pathnames of variables to exclude. Default is None.

is_indep_varbool or None

If None (the default), do no additional filtering of the inputs. If True, list only inputs connected to an output tagged openmdao:indep_var. If False, list only inputs _not_ connected to outputs tagged openmdao:indep_var.

is_design_varbool or None

If None (the default), do no additional filtering of the inputs. If True, list only inputs connected to outputs that are driver design variables. If False, list only inputs _not_ connected to outputs that are driver design variables.

tagsstr or iter of strs

User defined tags that can be used to filter what gets listed. Only inputs with the given tags will be listed. Default is None, which means there will be no filtering based on tags.

get_remotebool

If True, retrieve variables from other MPI processes as well.

rankint or None

If None, and get_remote is True, retrieve values from all MPI process to all other MPI processes. Otherwise, if get_remote is True, retrieve values from all MPI processes only to the specified rank.

return_rel_namesbool

If True, the names returned will be relative to the scope of this System. Otherwise they will be absolute names.

Returns:

dict

A dict of metadata keyed on name, where name is either absolute or relative based on the value of the return_rel_names arg, and metadata is a dict containing entries based on the value of the metadata_keys arg. Every metadata dict will always contain two entries, ‘prom_name’ and ‘discrete’, to indicate a given variable’s promoted name and whether or not it is discrete.

get_outputs_dir(*subdirs, mkdir=True)

Get the path under which all output files of this system are to be placed.

Parameters:

*subdirsstr

Subdirectories nested under the relevant problem output directory. To create {prob_output_dir}/a/b one would pass system.get_outputs_dir(‘a’, ‘b’).

mkdirbool

If True, attempt to create this directory if it does not exist.

Returns:

pathlib.Path

The path of the outputs directory for the problem.

get_promotions(inprom=None, outprom=None)

Return all promotions for the given promoted variable(s).

In other words, how and where did promotions occur to convert absolute variable names into the given promoted name(s) at the current System level.

Parameters:

inpromstr or None

The promoted input variable name.

outpromstr or None

The promoted output variable name.

Returns:

dict

Dictionary keyed on system pathname containing input and/or output promotion lists for each System where promotions occurred to produce the given promoted variable(s).

get_reports_dir()

Get the path to the directory where the report files should go.

If it doesn’t exist, it will be created.

Returns:

str

The path to the directory where reports should be written.

get_self_statics()

Override this in derived classes if compute_primal references static values.

Do NOT include self._discrete_inputs in the returned tuple. Include things like self.options[‘opt_name’], etc., that are used in compute_primal but are assumed to be constant during derivative computation.

Return value MUST be a tuple. Don’t forget the trailing comma if tuple has only one item. Return value MUST be hashable.

The order of these values doesn’t matter. They are only checked (by computing their hash) to see if they have changed since the last time compute_primal was jitted, and if so, compute_primal will be re-jitted.

Returns:

tuple

Tuple containing all static values required by compute_primal.

get_source(name)

Return the source variable connected to the given named variable.

The name can be a promoted name or an absolute name. If the given variable is an input, the absolute name of the connected source will be returned. If the given variable itself is a source, its own absolute name will be returned.

Parameters:

namestr

Absolute or promoted name of the variable.

Returns:

str

The absolute name of the source variable.

get_val(name, units=None, indices=None, get_remote=False, rank=None, vec_name='nonlinear', kind=None, flat=False, from_src=True)

Get an output/input/residual variable.

Function is used if you want to specify display units.

Parameters:

namestr

Promoted or relative variable name in the root system’s namespace.

unitsstr, optional

Units to convert to before return.

indicesint or list of ints or tuple of ints or int ndarray or Iterable or None, optional

Indices or slice to return.

get_remotebool or None

If True, retrieve the value even if it is on a remote process. Note that if the variable is remote on ANY process, this function must be called on EVERY process in the Problem’s MPI communicator. If False, only retrieve the value if it is on the current process, or only the part of the value that’s on the current process for a distributed variable. If None and the variable is remote or distributed, a RuntimeError will be raised.

rankint or None

If not None, only gather the value to this rank.

vec_namestr

Name of the vector to use. Defaults to ‘nonlinear’.

kindstr or None

Kind of variable (‘input’, ‘output’, or ‘residual’). If None, returned value will be either an input or output.

flatbool

If True, return the flattened version of the value.

from_srcbool

If True, retrieve value of an input variable from its connected source.

Returns:

object

The value of the requested output/input variable.

get_var_dup_info(name, io)

Return information about how the given variable is duplicated across MPI processes.

Parameters:

namestr

Name of the variable.

iostr

Either ‘input’ or ‘output’.

Returns:

tuple

A tuple of the form (is_duplicated, num_zeros, is_distributed).

get_var_sizes(name, io)

Return the sizes of the given variable on all procs.

Parameters:

namestr

Name of the variable.

iostr

Either ‘input’ or ‘output’.

Returns:

ndarray

Array of sizes of the variable on all procs.

is_explicit()

Return True if this is an explicit component.

Returns:

bool

True if this is an explicit component.

list_vars(val=True, prom_name=True, residuals=False, residuals_tol=None, units=False, shape=False, global_shape=False, bounds=False, scaling=False, desc=False, print_arrays=False, tags=None, print_tags=False, includes=None, excludes=None, is_indep_var=None, is_design_var=None, all_procs=False, list_autoivcs=False, out_stream=DEFAULT_OUT_STREAM, print_min=False, print_max=False, return_format='list')

Write a list of inputs and outputs sorted by component in execution order.

Parameters:

valbool, optional

When True, display output values. Default is True.

prom_namebool, optional

When True, display the promoted name of the variable. Default is True.

residualsbool, optional

When True, display residual values. Default is False.

residuals_tolfloat, optional

If set, limits the output of list_outputs to only variables where the norm of the resids array is greater than the given ‘residuals_tol’. Default is None.

unitsbool, optional

When True, display units. Default is False.

shapebool, optional

When True, display/return the shape of the value. Default is False.

global_shapebool, optional

When True, display/return the global shape of the value. Default is False.

boundsbool, optional

When True, display/return bounds (lower and upper). Default is False.

scalingbool, optional

When True, display/return scaling (ref, ref0, and res_ref). Default is False.

descbool, optional

When True, display/return description. Default is False.

print_arraysbool, optional

When False, in the columnar display, just display norm of any ndarrays with size > 1. The norm is surrounded by vertical bars to indicate that it is a norm. When True, also display full values of the ndarray below the row. Format is affected by the values set with numpy.set_printoptions Default is False.

tagsstr or list of strs

User defined tags that can be used to filter what gets listed. Only outputs with the given tags will be listed. Default is None, which means there will be no filtering based on tags.

print_tagsbool

When true, display tags in the columnar display.

includesNone, str, or iter of str

Collection of glob patterns for pathnames of variables to include. Default is None, which includes all output variables.

excludesNone, str, or iter of str

Collection of glob patterns for pathnames of variables to exclude. Default is None.

is_indep_varbool or None

If None (the default), do no additional filtering of the inputs. If True, list only outputs tagged openmdao:indep_var. If False, list only outputs that are _not_ tagged openmdao:indep_var.

is_design_varbool or None

If None (the default), do no additional filtering of the inputs. If True, list only inputs connected to outputs that are driver design variables. If False, list only inputs _not_ connected to outputs that are driver design variables.

all_procsbool, optional

When True, display output on all processors. Default is False.

list_autoivcsbool

If True, include auto_ivc outputs in the listing. Defaults to False.

out_streamfile-like

Where to send human readable output. Default is sys.stdout. Set to None to suppress.

print_minbool

When true, if the output value is an array, print its smallest value.

print_maxbool

When true, if the output value is an array, print its largest value.

return_formatstr

Indicates the desired format of the return value. Can have value of ‘list’ or ‘dict’. If ‘list’, the return value is a list of (name, metadata) tuples. if ‘dict’, the return value is a dictionary mapping {name: metadata}.

Returns:

list of (name, metadata) or dict of {name: metadata}

List or dict of output names and other optional information about those outputs.

load_case(case)

Pull all input and output variables from a Case into this System.

Override this method if the System requires special handling when loading a case.

Parameters:

caseCase or dict

A Case from a CaseReader, or a dictionary with key ‘inputs’ mapped to the output of problem.model.list_inputs and key ‘outputs’ mapped to the output of prob.model.list_outputs. Both list_inputs and list_outputs should be called with prom_name=True and return_format=’dict’.

load_model_options()

Load the relevant model options from Problem._metadata[‘model_options’].

This method examines each path filter and corresponding options in self._problem_meta[‘model_options’]. If this System’s pathname matches the given path filter, it will assume the value for each given option which it possesses.

local_range_iter(io)

Yield names and local ranges of all local variables in this system.

Parameters:

iostr

Either ‘input’ or ‘output’.

Yields:

tuple

A tuple of the form (abs_name, start, end).

property msginfo

Our instance pathname, if available, or our class name. For use in error messages.

Returns:

str

Either our instance pathname or class name.

set_constraint_options(name, ref=UNDEFINED, ref0=UNDEFINED, equals=UNDEFINED, lower=UNDEFINED, upper=UNDEFINED, adder=UNDEFINED, scaler=UNDEFINED, alias=UNDEFINED)

Set options for constraints in the model.

Can be used to set options that were set using add_constraint.

Parameters:

namestr

Name of the response variable in the system, or alias if given.

reffloat or ndarray, optional

Value of response variable that scales to 1.0 in the driver.

ref0float or ndarray, optional

Value of response variable that scales to 0.0 in the driver.

equalsfloat or ndarray, optional

Equality constraint value for the variable.

lowerfloat or ndarray, optional

Lower boundary for the variable.

upperfloat or ndarray, optional

Upper boundary for the variable.

adderfloat or ndarray, optional

Value to add to the model value to get the scaled value for the driver. adder is first in precedence. adder and scaler are an alterantive to using ref and ref0.

scalerfloat or ndarray, optional

Value to multiply the model value to get the scaled value for the driver. scaler is second in precedence. adder and scaler are an alterantive to using ref and ref0.

aliasstr, optional

Alias for this response. Necessary when adding multiple constraints on different indices or slices of a single variable.

set_design_var_options(name, lower=UNDEFINED, upper=UNDEFINED, scaler=UNDEFINED, adder=UNDEFINED, ref=UNDEFINED, ref0=UNDEFINED)

Set options for design vars in the model.

Can be used to set the options outside of setting them when calling add_design_var

Parameters:

namestr

Name of the variable in this system’s namespace.

lowerfloat or ndarray, optional

Lower boundary for the input.

upperupper or ndarray, optional

Upper boundary for the input.

scalerfloat or ndarray, optional

Value to multiply the model value to get the scaled value for the driver. scaler is second in precedence. adder and scaler are an alterantive to using ref and ref0.

adderfloat or ndarray, optional

Value to add to the model value to get the scaled value for the driver. adder is first in precedence. adder and scaler are an alterantive to using ref and ref0.

reffloat or ndarray, optional

Value of design var that scales to 1.0 in the driver.

ref0float or ndarray, optional

Value of design var that scales to 0.0 in the driver.

set_objective_options(name, ref=UNDEFINED, ref0=UNDEFINED, adder=UNDEFINED, scaler=UNDEFINED, alias=UNDEFINED)

Set options for objectives in the model.

Can be used to set options after they have been set by add_objective.

Parameters:

namestr

Name of the response variable in the system, or alias if given.

reffloat or ndarray, optional

Value of response variable that scales to 1.0 in the driver.

ref0float or ndarray, optional

Value of response variable that scales to 0.0 in the driver.

adderfloat or ndarray, optional

Value to add to the model value to get the scaled value for the driver. adder is first in precedence. adder and scaler are an alterantive to using ref and ref0.

scalerfloat or ndarray, optional

Value to multiply the model value to get the scaled value for the driver. scaler is second in precedence. adder and scaler are an alterantive to using ref and ref0.

aliasstr

Alias for this response. Used to disambiguate variable names when adding multiple objectives on different indices or slices of a single variable. Deprecated.

set_output_solver_options(name, lower=UNDEFINED, upper=UNDEFINED, ref=UNDEFINED, ref0=UNDEFINED, res_ref=UNDEFINED)

Set solver output options.

Allows the user to set output solver options after the output has been defined and metadata set using the add_ouput method.

Parameters:

namestr

Name of the variable in this system’s namespace.

lowerfloat or list or tuple or ndarray or None

Lower bound(s) in user-defined units. It can be (1) a float, (2) an array_like consistent with the shape arg (if given), or (3) an array_like matching the shape of val, if val is array_like. A value of None means this output has no lower bound. Default is None.

upperfloat or list or tuple or ndarray or None

Upper bound(s) in user-defined units. It can be (1) a float, (2) an array_like consistent with the shape arg (if given), or (3) an array_like matching the shape of val, if val is array_like. A value of None means this output has no upper bound. Default is None.

reffloat

Scaling parameter. The value in the user-defined units of this output variable when the scaled value is 1. Default is 1.

ref0float

Scaling parameter. The value in the user-defined units of this output variable when the scaled value is 0. Default is 0.

res_reffloat

Scaling parameter. The value in the user-defined res_units of this output’s residual when the scaled value is 1. Default is None, which means residual scaling matches output scaling.

set_solver_print(level=2, depth=1e+99, type_='all')

Control printing for solvers and subsolvers in the model.

Parameters:

levelint

Iprint level. Set to 2 to print residuals each iteration; set to 1 to print just the iteration totals; set to 0 to disable all printing except for failures, and set to -1 to disable all printing including failures.

depthint

How deep to recurse. For example, you can set this to 0 if you only want to print the top level linear and nonlinear solver messages. Default prints everything.

type_str

Type of solver to set: ‘LN’ for linear, ‘NL’ for nonlinear, or ‘all’ for all.

set_val(name, val, units=None, indices=None)

Set an input or output variable.

Parameters:

namestr

Promoted or relative variable name in the system’s namespace.

valobject

Value to assign to this variable.

unitsstr, optional

Units of the value.

indicesint or list of ints or tuple of ints or int ndarray or Iterable or None, optional

Indices or slice to set.

setup_partials()

Declare partials.

This is meant to be overridden by component classes. All partials should be declared here since this is called after all size/shape information is known for all variables.

property under_approx

Return True if under complex step or finite difference.

Returns:

bool

True if under CS or FD.

use_fixed_coloring(coloring=<object object>, recurse=True)

Use a precomputed coloring for this System.

Parameters:

coloringstr

A coloring filename. If no arg is passed, filename will be determined automatically.

recursebool

If True, set fixed coloring in all subsystems that declare a coloring. Ignored if a specific coloring is passed in.